Appendix E — References

Barry, Timothy, Kaishu Mason, Kathryn Roeder, and Eugene Katsevich. 2024. “Robust differential expression testing for single-cell CRISPR screens at low multiplicity of infection.” Genome Biology 25 (124): 1–30.

Barry, Timothy, Kathryn Roeder, and Eugene Katsevich. 2024. “Exponential family measurement error models for single-cell CRISPR screens.” Biostatistics, kxae010.

Barry, Timothy, Xuran Wang, John A. Morris, Kathryn Roeder, and Eugene Katsevich. 2021. “SCEPTRE improves calibration and sensitivity in single-cell CRISPR screen analysis.” Genome Biology 22 (1): 1–19.

Gasperini, Molly, Andrew J. Hill, José L. McFaline-Figueroa, et al. 2019. “A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.” Cell 176 (1): 377–90.

Papalexi, Efthymia, Eleni Mimitou, Andrew W. Butler, et al. 2021. “Characterizing the molecular regulation of inhibitory immune checkpoints with multi-modal single-cell screens.” Nature Genetics 53 (3): 322–31.

Replogle, Joseph M, Reuben A Saunders, Angela N Pogson, et al. 2022. “Mapping Information-Rich Genotype-Phenotype Landscapes with Genome-Scale Perturb-Seq.” Cell 185 (14): 2559–75.