Appendix E — References

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Barry, Timothy, Kathryn Roeder, and Eugene Katsevich. 2024. Exponential family measurement error models for single-cell CRISPR screens.” Biostatistics, kxae010.
Barry, Timothy, Xuran Wang, John A. Morris, Kathryn Roeder, and Eugene Katsevich. 2021. SCEPTRE improves calibration and sensitivity in single-cell CRISPR screen analysis.” Genome Biology 22 (1): 1–19.
Gasperini, Molly, Andrew J. Hill, José L. McFaline-Figueroa, Beth Martin, Seungsoo Kim, Melissa D. Zhang, Dana Jackson, et al. 2019. A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.” Cell 176 (1): 377–90.
Papalexi, Efthymia, Eleni Mimitou, Andrew W. Butler, Samantha Foster, Bernadette Bracken, William M. Mauck III, Hans-Hermann Wessels, Bertrand Z. Yeung, Peter Smibert, and Rahul Satija. 2021. Characterizing the molecular regulation of inhibitory immune checkpoints with multi-modal single-cell screens.” Nature Genetics 53 (3): 322–31.
Replogle, Joseph M, Reuben A Saunders, Angela N Pogson, Jeffrey A Hussmann, Alexander Lenail, Alina Guna, Lauren Mascibroda, et al. 2022. “Mapping Information-Rich Genotype-Phenotype Landscapes with Genome-Scale Perturb-Seq.” Cell 185 (14): 2559–75.